Index

A

analyse_images() (RASPRoutines.RASP_Routines method) analyse_round_images() (RASPRoutines.RASP_Routines method) analyse_round_subfolder() (RASPRoutines.RASP_Routines method)

Analysis_Functions (class in AnalysisFunctions) AnalysisFunctions module

B

bincalculator() (AnalysisFunctions.Analysis_Functions method)

C

calculate_gradient_field() (AnalysisFunctions.Analysis_Functions method) calculate_mask_fill() (AnalysisFunctions.Analysis_Functions method) calculate_radiality() (AnalysisFunctions.Analysis_Functions method) calculate_region_properties() (AnalysisFunctions.Analysis_Functions method) calculate_spot_colocalisation_likelihood_ratio() (AnalysisFunctions.Analysis_Functions method) calibrate_area() (RASPRoutines.RASP_Routines method) calibrate_radiality() (RASPRoutines.RASP_Routines method)

compute_image_props() (AnalysisFunctions.Analysis_Functions method) compute_spot_and_cell_props() (AnalysisFunctions.Analysis_Functions method) compute_spot_props() (AnalysisFunctions.Analysis_Functions method) count_spots() (RASPRoutines.RASP_Routines method) create_filled_region() (AnalysisFunctions.Analysis_Functions method) create_gaussian_kernel() (AnalysisFunctions.Analysis_Functions method) create_kernel() (AnalysisFunctions.Analysis_Functions method)

D

default_spotanalysis_routine() (AnalysisFunctions.Analysis_Functions method)

detect_large_features() (AnalysisFunctions.Analysis_Functions method) dilate_pixel() (AnalysisFunctions.Analysis_Functions method)

E

estimate_intensity() (AnalysisFunctions.Analysis_Functions method)

F

file_search() (RASPRoutines.RASP_Routines method)

G

Gauss2DFitting() (AnalysisFunctions.Analysis_Functions method) gen_CSRmats() (AnalysisFunctions.Analysis_Functions method)

generate_mask_and_spot_indices() (AnalysisFunctions.Analysis_Functions method) get_infocus_planes() (RASPRoutines.RASP_Routines method)

H

histogram_plot() (PlottingFunctions.Plotter method)

I

image_plot() (PlottingFunctions.Plotter method) image_scatter_plot() (PlottingFunctions.Plotter method) infocus_indices() (AnalysisFunctions.Analysis_Functions method)

intensity_pixel_indices() (AnalysisFunctions.Analysis_Functions method) IO_Functions (class in IOFunctions) IOFunctions module

L

load_json() (IOFunctions.IO_Functions method)

M

make_datarray_cell() (AnalysisFunctions.Analysis_Functions method) make_datarray_spot() (AnalysisFunctions.Analysis_Functions method) make_directory() (IOFunctions.IO_Functions method) module AnalysisFunctions IOFunctions PlottingFunctions RASPRoutines

P

Plotter (class in PlottingFunctions)

PlottingFunctions module

R

RASP_Routines (class in RASPRoutines) RASPRoutines module read_multichannel_tiff_tophotons() (IOFunctions.IO_Functions method)

read_tiff() (IOFunctions.IO_Functions method) read_tiff_tophotons() (IOFunctions.IO_Functions method) rejectoutliers() (AnalysisFunctions.Analysis_Functions method) rejectoutliers_ind() (AnalysisFunctions.Analysis_Functions method) ricker_wavelet() (AnalysisFunctions.Analysis_Functions method)

S

save_analysis_params() (IOFunctions.IO_Functions method) save_analysis_results() (RASPRoutines.RASP_Routines method) save_analysis_results_onesavefile() (RASPRoutines.RASP_Routines method)

save_as_json() (IOFunctions.IO_Functions method) single_image_analysis() (RASPRoutines.RASP_Routines method) small_feature_kernel() (AnalysisFunctions.Analysis_Functions method)

T

test_spot_mask_overlap() (AnalysisFunctions.Analysis_Functions method)

two_column_plot() (PlottingFunctions.Plotter method)

W

write_tiff() (IOFunctions.IO_Functions method)