src

• AnalysisFunctions module
  • Analysis_Functions
    • Analysis_Functions.Gauss2DFitting()
    • Analysis_Functions.bincalculator()
    • Analysis_Functions.calculate_gradient_field()
    • Analysis_Functions.calculate_mask_fill()
    • Analysis_Functions.calculate_radiality()
    • Analysis_Functions.calculate_region_properties()
    • Analysis_Functions.calculate_spot_colocalisation_likelihood_ratio()
    • Analysis_Functions.compute_image_props()
    • Analysis_Functions.compute_spot_and_cell_props()
    • Analysis_Functions.compute_spot_props()
    • Analysis_Functions.create_filled_region()
    • Analysis_Functions.create_gaussian_kernel()
    • Analysis_Functions.create_kernel()
    • Analysis_Functions.default_spotanalysis_routine()
    • Analysis_Functions.detect_large_features()
    • Analysis_Functions.dilate_pixel()
    • Analysis_Functions.estimate_intensity()
    • Analysis_Functions.gen_CSRmats()
    • Analysis_Functions.generate_mask_and_spot_indices()
    • Analysis_Functions.infocus_indices()
    • Analysis_Functions.intensity_pixel_indices()
    • Analysis_Functions.make_datarray_cell()
    • Analysis_Functions.make_datarray_spot()
    • Analysis_Functions.rejectoutliers()
    • Analysis_Functions.rejectoutliers_ind()
    • Analysis_Functions.ricker_wavelet()
    • Analysis_Functions.small_feature_kernel()
    • Analysis_Functions.test_spot_mask_overlap()
• IOFunctions module
  • IO_Functions
    • IO_Functions.load_json()
    • IO_Functions.make_directory()
    • IO_Functions.read_multichannel_tiff_tophotons()
    • IO_Functions.read_tiff()
    • IO_Functions.read_tiff_tophotons()
    • IO_Functions.save_analysis_params()
    • IO_Functions.save_as_json()
    • IO_Functions.write_tiff()
• PlottingFunctions module
  • Plotter
    • Plotter.histogram_plot()
    • Plotter.image_plot()
    • Plotter.image_scatter_plot()
    • Plotter.two_column_plot()
• RASPRoutines module
  • RASP_Routines
    • RASP_Routines.analyse_images()
    • RASP_Routines.analyse_round_images()
    • RASP_Routines.analyse_round_subfolder()
    • RASP_Routines.calibrate_area()
    • RASP_Routines.calibrate_radiality()
    • RASP_Routines.count_spots()
    • RASP_Routines.file_search()
    • RASP_Routines.get_infocus_planes()
    • RASP_Routines.save_analysis_results()
    • RASP_Routines.save_analysis_results_onesavefile()
    • RASP_Routines.single_image_analysis()